duuth that program you can download at my link is the most easyest way to make a .pk3 it has the option to save it as a .pk3 its as easy as you can make it.
just copy the stuff make a map in the program past and you put it in that way just looks like the tourial cous its made with that program.
short say packscape is the best program i no to make a .pk3 cous its easy and you dont have to rename it so its a .pk3 wats a hell of a job if you cant save it as a .pk3 right away
i hated .pk3 befor i got that program so trust me it makes a lot different now i am working longer on making a .arena file then that i am working on making a .pk3 file
http://www.planetwolfenstein.com/4newbies/pakscape.htm